edu.umd.cloud9.collection.medline
Class MedlineDocnoMapping

java.lang.Object
  edu.umd.cloud9.collection.medline.MedlineDocnoMapping

All Implemented Interfaces:

DocnoMapping

public class MedlineDocnoMapping
extends Object
implements DocnoMapping

Object that maps between MEDLINE docids (PMIDs) to docnos (sequentially-numbered ints).

The main of this class provides a simple program for accessing docno mappings. Command-line arguments are as follows:

• list, getDocno, getDocid: the command—list all mappings; get docno from docid; or, get docid from docno
• [mappings-file]: the mappings file
• [docid/docno]: the docid or docno (optional)

Author:

Jimmy Lin

Constructor Summary

MedlineDocnoMapping()
Creates a MedlineDocnoMapping object

Method Summary

String	getDocid(int docno) Returns the docid for a particular docno.
int	getDocno(String docid) Returns the docno for a particular docid.
void	loadMapping(Path p, FileSystem fs) Loads a mapping file containing the docid to docno mappings.
static void	main(String[] args) Simple program the provides access to the docno/docid mappings.
static int[]	readDocidData(Path p, FileSystem fs) Reads a mappings file into memory.
static void	writeDocidData(String inputFile, String outputFile) Creates a mappings file from the contents of a flat text file containing docid to docno mappings.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MedlineDocnoMapping

public MedlineDocnoMapping()

Creates a MedlineDocnoMapping object

Method Detail

getDocno

public int getDocno(String docid)

Description copied from interface: DocnoMapping

Returns the docno for a particular docid.

Specified by:

getDocno in interface DocnoMapping

Parameters:

docid - the docid

Returns:

the docno for the docid

getDocid

public String getDocid(int docno)

Description copied from interface: DocnoMapping

Returns the docid for a particular docno.

Specified by:

getDocid in interface DocnoMapping

Parameters:

docno - the docno

Returns:

the docid for the docno

loadMapping

public void loadMapping(Path p,
                        FileSystem fs)
                 throws IOException

Description copied from interface: DocnoMapping

Loads a mapping file containing the docid to docno mappings.

Specified by:

loadMapping in interface DocnoMapping

Parameters:

p - path to the mappings file

fs - appropriate FileSystem

Throws:

IOException

writeDocidData

public static void writeDocidData(String inputFile,
                                  String outputFile)
                           throws IOException

Creates a mappings file from the contents of a flat text file containing docid to docno mappings. This method is used by NumberMedlineCitations internally.

Parameters:

inputFile - flat text file containing docid to docno mappings

outputFile - output mappings file

Throws:

IOException

readDocidData

public static int[] readDocidData(Path p,
                                  FileSystem fs)
                           throws IOException

Reads a mappings file into memory.

Parameters:

p - path to the mappings file

fs - appropriate FileSystem

Returns:

an array of docids; the index position of each docid is its docno

Throws:

IOException

main

public static void main(String[] args)
                 throws IOException

Simple program the provides access to the docno/docid mappings.

Parameters:

args - command-line arguments

Throws:

IOException